If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ), 'gf_id' => 'HOM05D000684', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000684' ), 'data_identifier' => 'HOM05D000684', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000684', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '835', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p38650' => 'bna', 'A03p15770' => 'bna', 'A03p25580' => 'bna', 'A04p25360' => 'bna', 'A05p01450' => 'bna', 'A05p12680' => 'bna', 'A05p18630' => 'bna', 'A05p34130' => 'bna', 'A09p06820' => 'bna', 'A09p28110' => 'bna', 'Aa31LG10G2040' => 'aar', 'Aa31LG11G3090' => 'aar', 'Aa31LG1G27710' => 'aar', 'Aa31LG3G8630' => 'aar', 'Aa31LG3G8640' => 'aar', 'Aa31LG5G4610' => 'aar', 'Aa31LG8G2520' => 'aar', 'Aa31LG9G11060' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.158' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1371' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.162' => 'aag', 'Actinidia01399' => 'ach', 'Actinidia01400' => 'ach', 'Actinidia02331' => 'ach', 'Actinidia04214' => 'ach', 'Actinidia04215' => 'ach', 'Actinidia09688' => 'ach', 'Actinidia10794' => 'ach', 'Actinidia12801' => 'ach', 'Actinidia12802' => 'ach', 'Actinidia26878' => 'ach', 'Actinidia32866' => 'ach', 'Ah.05g179860' => 'amhyb', 'Ah.06g184330' => 'amhyb', 'Ah.12g052260' => 'amhyb', 'Ah.14g083160' => 'amhyb', 'Ah.14g087820' => 'amhyb', 'AL1G61450' => 'aly', 'AL3G27760' => 'aly', 'AL4G28470' => 'aly', 'AL4G45640' => 'aly', 'AL6G35010' => 'aly', 'AL6G45270' => 'aly', 'AL8G26630' => 'aly', 'Aqoxy1G01620' => 'aox', 'Aqoxy1G02403' => 'aox', 'Aqoxy1G02898' => 'aox', 'Aqoxy4G00774' => 'aox', 'Aqoxy5G04129' => 'aox', 'Aqoxy7G00157' => 'aox', 'Aqoxy7G00379' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E14DC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3S4NQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBE5X7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G40GES' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2TPJU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NA6SJF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NZI24B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PF3CMY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6JTSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V708II' => 'arhy', 'AT1G53090' => 'ath', 'AT2G32950' => 'ath', 'AT2G46340' => 'ath', 'AT3G15354' => 'ath', 'AT4G11110' => 'ath', 'AT5G23730' => 'ath', 'AT5G52250' => 'ath', 'ATR0680G357' => 'atr', 'ATR0737G178' => 'atr', 'ATR1093G042' => 'atr', 'ATR1128G039' => 'atr', 'Atru.chr1.470' => 'acertr', 'Atru.chr10.2311' => 'acertr', 'Atru.chr10.2312' => 'acertr', 'Atru.chr2.2603' => 'acertr', 'Atru.chr5.625' => 'acertr', 'Atru.chr6.3264' => 'acertr', 'Atru.chr9.2049' => 'acertr', 'Atru.chr9.2050' => 'acertr', 'Atru.chr9.2051' => 'acertr', 'AUR62004454' => 'cqu', 'AUR62010805' => 'cqu', 'AUR62012768' => 'cqu', 'AUR62015122' => 'cqu', 'AUR62017583' => 'cqu', 'AUR62019429' => 'cqu', 'AUR62019802' => 'cqu', 'AUR62021890' => 'cqu', 'AUR62023494' => 'cqu', 'AUR62039206' => 'cqu', 'AUR62040019' => 'cqu', 'BcaB01g01587' => 'bca', 'BcaB01g03223' => 'bca', 'BcaB01g04194' => 'bca', 'BcaB02g10508' => 'bca', 'BcaB02g10928' => 'bca', 'BcaB04g19850' => 'bca', 'BcaB04g19851' => 'bca', 'BcaB05g24152' => 'bca', 'BcaB06g28643' => 'bca', 'BcaB06g29558' => 'bca', 'BcaC01g05076' => 'bca', 'BcaC01g05875' => 'bca', 'BcaC01g06174' => 'bca', 'BcaC02g07875' => 'bca', 'BcaC02g11360' => 'bca', 'BcaC02g12697' => 'bca', 'BcaC02g12815' => 'bca', 'BcaC04g21108' => 'bca', 'BcaC05g28991' => 'bca', 'BcaC08g44044' => 'bca', 'BcaC09g48495' => 'bca', 'BolC1t04878H' => 'bol', 'BolC3t14241H' => 'bol', 'BolC3t15400H' => 'bol', 'BolC4t21815H' => 'bol', 'BolC4t21816H' => 'bol', 'BolC4t21833H' => 'bol', 'BolC4t23211H' => 'bol', 'BolC4t27720H' => 'bol', 'BolC5t33875H' => 'bol', 'BolC6t36625H' => 'bol', 'BolC9t53670H' => 'bol', 'BolC9t56397H' => 'bol', 'BolSC94t61274H' => 'bol', 'BraA01t03919Z' => 'bra', 'BraA03t10867Z' => 'bra', 'BraA03t11774Z' => 'bra', 'BraA04t18039Z' => 'bra', 'BraA05t19142Z' => 'bra', 'BraA05t20206Z' => 'bra', 'BraA05t20754Z' => 'bra', 'BraA05t22234Z' => 'bra', 'BraA09t36328Z' => 'bra', 'BraA09t38375Z' => 'bra', 'C01p49140' => 'bna', 'C03p18440' => 'bna', 'C03p21530' => 'bna', 'C03p30510' => 'bna', 'C04p01640' => 'bna', 'C04p16610' => 'bna', 'C04p62440' => 'bna', 'C05p51880' => 'bna', 'C06p14450' => 'bna', 'C09p07540' => 'bna', 'C09p35610' => 'bna', 'CAN.G1074.7' => 'can', 'CAN.G162.56' => 'can', 'CAN.G1660.1' => 'can', 'CANSAT56G2927' => 'cansat', 'CANSAT56G3601' => 'cansat', 'CANSAT64G0100' => 'cansat', 'CANSAT64G1215' => 'cansat', 'CANSAT78G0549' => 'cansat', 'CARHR043310' => 'chi', 'CARHR090320' => 'chi', 'CARHR126880' => 'chi', 'CARHR126890' => 'chi', 'CARHR141620' => 'chi', 'CARHR189800' => 'chi', 'CARHR255480' => 'chi', 'CARHR265220' => 'chi', 'Carub.0001s4225' => 'cru', 'Carub.0003s1500' => 'cru', 'Carub.0004s1438' => 'cru', 'Carub.0004s2904' => 'cru', 'Carub.0006s2148' => 'cru', 'Carub.0006s2993' => 'cru', 'Carub.0008s1234' => 'cru', 'Ca_01846_v3' => 'car', 'Ca_06056_v3' => 'car', 'Ca_24522_v3' => 'car', 'Ca_26626_v3' => 'car', 'CBR_g20429' => 'cbr', 'CBR_g23784' => 'cbr', 'CBR_g51968' => 'cbr', 'Cc00_g22680' => 'ccan', 'Cc02_g39010' => 'ccan', 'Cc04_g17080' => 'ccan', 'Cc05_g02740' => 'ccan', 'Cc05_g02750' => 'ccan', 'Cc05_g02770' => 'ccan', 'Cc05_g02820' => 'ccan', 'Cc05_g12000' => 'ccan', 'Cc05_g12010' => 'ccan', 'Cc08_g15740' => 'ccan', 'Cc09_g01080' => 'ccan', 'CDE02G1374' => 'cde', 'CDE02G1529' => 'cde', 'CDE02G2575' => 'cde', 'CDE03G0300' => 'cde', 'CDE03G0436' => 'cde', 'CDE04G1992' => 'cde', 'CDE04G2061' => 'cde', 'CDE04G2105' => 'cde', 'CDE04G3769' => 'cde', 'CDE06G1688' => 'cde', 'CDE07G0527' => 'cde', 'Cfa008312' => 'cfa', 'Cfa012846' => 'cfa', 'Cfa014312' => 'cfa', 'Ciclev10005222m.g' => 'ccl', 'Ciclev10007392m.g' => 'ccl', 'Ciclev10014491m.g' => 'ccl', 'Ciclev10014775m.g' => 'ccl', 'Ciclev10018610m.g' => 'ccl', 'CiPaw.03G105600' => 'cil', 'CiPaw.03G154600' => 'cil', 'CiPaw.09G100000' => 'cil', 'CiPaw.11G124200' => 'cil', 'CiPaw.11G169900' => 'cil', 'CiPaw.12G085100' => 'cil', 'CiPaw.12G118500' => 'cil', 'ClCG01G002030' => 'cla', 'ClCG01G009780' => 'cla', 'ClCG02G018100' => 'cla', 'ClCG11G000130' => 'cla', 'ClCG11G018070' => 'cla', 'COL.COLO4_04558' => 'col', 'COL.COLO4_06324' => 'col', 'COL.COLO4_21724' => 'col', 'COL.COLO4_27174' => 'col', 'COL.COLO4_31850' => 'col', 'Cpa.g.c35109' => 'cpa', 'Cpa.g.sc107.44' => 'cpa', 'Cpa.g.sc122.30' => 'cpa', 'Cpa.g.sc132.29' => 'cpa', 'Cpa.g.sc152.61' => 'cpa', 'Cpa.g.sc194.3' => 'cpa', 'Cpa.g.sc194.5' => 'cpa', 'Cpa.g.sc80.65' => 'cpa', 'Cpa.g.sc970.1' => 'cpa', 'Cre01.g053850' => 'cre', 'Cre02.g085050' => 'cre', 'Cre13.g602700' => 'cre', 'CsaV3_1G045940' => 'csa', 'CsaV3_3G050020' => 'csa', 'CsaV3_4G033700' => 'csa', 'CsaV3_5G002160' => 'csa', 'CsaV3_6G015450' => 'csa', 'CSS0001264' => 'camsi', 'CSS0011869' => 'camsi', 'CSS0012938' => 'camsi', 'CSS0016750' => 'camsi', 'CSS0019145' => 'camsi', 'CSS0020835' => 'camsi', 'CSS0023570' => 'camsi', 'CSS0027665' => 'camsi', 'CSS0027767' => 'camsi', 'CSS0031053' => 'camsi', 'CSS0033440' => 'camsi', 'CSS0034663' => 'camsi', 'CSS0035979' => 'camsi', 'CSS0037470' => 'camsi', 'CSS0049238' => 'camsi', 'DCAR_000480' => 'dca', 'DCAR_004829' => 'dca', 'DCAR_004831' => 'dca', 'DCAR_006863' => 'dca', 'DCAR_008540' => 'dca', 'DCAR_012918' => 'dca', 'DCAR_013108' => 'dca', 'DCAR_018192' => 'dca', 'DCAR_020989' => 'dca', 'DCAR_027809' => 'dca', 'Dinv08713' => 'din', 'Dinv13951' => 'din', 'Dinv20174' => 'din', 'Dinv20175' => 'din', 'Dinv28449' => 'din', 'Dinv37553' => 'din', 'Dinv38862' => 'din', 'Dinv39755' => 'din', 'Dinv43896' => 'din', 'Duzib068G0020' => 'dzi', 'Duzib068G0819' => 'dzi', 'Duzib084G0870' => 'dzi', 'Duzib138G0738' => 'dzi', 'Duzib138G1612' => 'dzi', 'Duzib160G0253' => 'dzi', 'Duzib170G0222' => 'dzi', 'Duzib205G0698' => 'dzi', 'Duzib213G0513' => 'dzi', 'Duzib268G1876' => 'dzi', 'ECA232G2956' => 'eca', 'ECA234G0110' => 'eca', 'ECA234G0823' => 'eca', 'ECA234G1205' => 'eca', 'ECA234G3468' => 'eca', 'ECA236G4458' => 'eca', 'ECA240G3643' => 'eca', 'ECA240G3895' => 'eca', 'EL10Ac1g00310' => 'bvu', 'EL10Ac4g08184' => 'bvu', 'EL10Ac5g12880' => 'bvu', 'EL10Ac8g20146' => 'bvu', 'EL10Ac9g22825' => 'bvu', 'Eucgr.D01370' => 'egr', 'Eucgr.D01376' => 'egr', 'Eucgr.D01772' => 'egr', 'Eucgr.E00073' => 'egr', 'Eucgr.F03314' => 'egr', 'Eucgr.K00249' => 'egr', 'Eucgr.K00737' => 'egr', 'FAN01G1132' => 'fan', 'FAN01G2772' => 'fan', 'FAN01G2843' => 'fan', 'FAN03G2006' => 'fan', 'FAN04G1449' => 'fan', 'FAN04G2151' => 'fan', 'FAN06G0030' => 'fan', 'FAN06G2184' => 'fan', 'FAN06G2569' => 'fan', 'FAN06G4762' => 'fan', 'FAN08G1227' => 'fan', 'FAN08G3185' => 'fan', 'FAN10G2450' => 'fan', 'FAN10G2995' => 'fan', 'FAN10G4145' => 'fan', 'FAN11G2306' => 'fan', 'FAN11G2576' => 'fan', 'FAN13G0669' => 'fan', 'FAN13G2641' => 'fan', 'FAN16G3354' => 'fan', 'FAN18G0037' => 'fan', 'FAN18G3669' => 'fan', 'FAN18G4381' => 'fan', 'FAN21G0648' => 'fan', 'FAN21G0988' => 'fan', 'FAN25G0152' => 'fan', 'FAN25G0411' => 'fan', 'FvH4_3g01260' => 'fve', 'FvH4_3g19920' => 'fve', 'FvH4_5g04010' => 'fve', 'FvH4_5g22570' => 'fve', 'FvH4_6g26771' => 'fve', 'FvH4_6g30271' => 'fve', 'FvH4_7g15970' => 'fve', 'FvH4_7g29370' => 'fve', 'Glyma.01G224200' => 'gma', 'Glyma.02G267800' => 'gma', 'Glyma.05G214900' => 'gma', 'Glyma.06G242100' => 'gma', 'Glyma.07G058200' => 'gma', 'Glyma.08G021200' => 'gma', 'Glyma.11G018700' => 'gma', 'Glyma.12G155700' => 'gma', 'Glyma.12G224600' => 'gma', 'Glyma.13G276700' => 'gma', 'Glyma.14G049700' => 'gma', 'Glyma.16G027200' => 'gma', 'Glyma.18G143400' => 'gma', 'Gohir.1Z049363' => 'ghi', 'Gohir.A03G050950' => 'ghi', 'Gohir.A03G092300' => 'ghi', 'Gohir.A05G214200' => 'ghi', 'Gohir.A06G038400' => 'ghi', 'Gohir.A08G202000' => 'ghi', 'Gohir.A09G175450' => 'ghi', 'Gohir.A10G010500' => 'ghi', 'Gohir.A11G095100' => 'ghi', 'Gohir.A11G152500' => 'ghi', 'Gohir.A11G285100' => 'ghi', 'Gohir.A12G234800' => 'ghi', 'Gohir.D02G121100' => 'ghi', 'Gohir.D07G090375' => 'ghi', 'Gohir.D09G170242' => 'ghi', 'Gohir.D10G010200' => 'ghi', 'Gohir.D11G100100' => 'ghi', 'Gohir.D11G159400' => 'ghi', 'Gohir.D11G297950' => 'ghi', 'Gohir.D12G235900' => 'ghi', 'Gorai.005G133100' => 'gra', 'Gorai.006G191600' => 'gra', 'Gorai.007G106300' => 'gra', 'Gorai.007G170000' => 'gra', 'Gorai.007G322900' => 'gra', 'Gorai.008G252600' => 'gra', 'Gorai.011G011200' => 'gra', 'GSVIVG01007271001' => 'vvi', 'GSVIVG01014332001' => 'vvi', 'GSVIVG01014333001' => 'vvi', 'GSVIVG01014334001' => 'vvi', 'GSVIVG01019492001' => 'vvi', 'GSVIVG01020557001' => 'vvi', 'GSVIVG01020559001' => 'vvi', 'GSVIVG01027054001' => 'vvi', 'GSVIVG01028986001' => 'vvi', 'GSVIVG01030511001' => 'vvi', 'HanXRQChr03g0085121' => 'han', 'HanXRQChr05g0143161' => 'han', 'HanXRQChr09g0253511' => 'han', 'HanXRQChr10g0292671' => 'han', 'HanXRQChr10g0302771' => 'han', 'HanXRQChr10g0306131' => 'han', 'HanXRQChr11g0328521' => 'han', 'HanXRQChr11g0330731' => 'han', 'HanXRQChr11g0330741' => 'han', 'HanXRQChr11g0330751' => 'han', 'HanXRQChr11g0353071' => 'han', 'HanXRQChr12g0364241' => 'han', 'HanXRQChr15g0494631' => 'han', 'HanXRQChr15g0495571' => 'han', 'HanXRQChr16g0516861' => 'han', 'HanXRQChr17g0535361' => 'han', 'HanXRQChr17g0554591' => 'han', 'Haze_06889' => 'cav', 'Haze_08673' => 'cav', 'Haze_09429' => 'cav', 'Haze_12761' => 'cav', 'Haze_13723' => 'cav', 'Hma1.2p1_0154F.1_g067980' => 'hma', 'Hma1.2p1_0177F.1_g078120' => 'hma', 'Hma1.2p1_0298F.1_g117350' => 'hma', 'Hma1.2p1_0298F.1_g117360' => 'hma', 'Hma1.2p1_0384F.1_g141100' => 'hma', 'Hma1.2p1_0531F.1_g173340' => 'hma', 'Hma1.2p1_0898F.1_g234420' => 'hma', 'Hma1.2p1_0898F.1_g234430' => 'hma', 'Hma1.2p1_2900F.1_g330010' => 'hma', 'Hma1.2p1_3335F.1_g335320' => 'hma', 'HPP92_007625' => 'vpl', 'HPP92_007626' => 'vpl', 'HPP92_010886' => 'vpl', 'HPP92_010887' => 'vpl', 'HPP92_010891' => 'vpl', 'HPP92_020057' => 'vpl', 'HPP92_022839' => 'vpl', 'HPP92_022840' => 'vpl', 'HPP92_022841' => 'vpl', 'HPP92_026119' => 'vpl', 'HPP92_026120' => 'vpl', 'Hund08435' => 'sun', 'Hund08437' => 'sun', 'Hund08438' => 'sun', 'Hund11408' => 'sun', 'Hund22901' => 'sun', 'Hund23416' => 'sun', 'Lalb_Chr04g0254521' => 'lal', 'Lalb_Chr04g0254531' => 'lal', 'Lalb_Chr05g0224261' => 'lal', 'Lalb_Chr16g0390531' => 'lal', 'Lalb_Chr17g0347231' => 'lal', 'Lalb_Chr20g0109651' => 'lal', 'Lalb_Chr25g0286351' => 'lal', 'Lj1A1237T46' => 'lonja', 'Lj1C783G4' => 'lonja', 'Lj1C842T9' => 'lonja', 'Lj1P996T30' => 'lonja', 'Lj3g0014884' => 'lja', 'Lj3g0024238' => 'lja', 'Lj8C211T0' => 'lonja', 'Lj9C592T5' => 'lonja', 'LjContig00029g0026581' => 'lja', 'LjContig00312_ERROPOS870357g0004768' => 'lja', 'Lsat_1_v5_gn_3_10081' => 'lsa', 'Lsat_1_v5_gn_3_139181' => 'lsa', 'Lsat_1_v5_gn_4_24200' => 'lsa', 'Lsat_1_v5_gn_4_62980' => 'lsa', 'Lsat_1_v5_gn_5_123420' => 'lsa', 'Lsat_1_v5_gn_5_127880' => 'lsa', 'Lsat_1_v5_gn_5_41821' => 'lsa', 'Lsat_1_v5_gn_5_55560' => 'lsa', 'Lsat_1_v5_gn_6_78100' => 'lsa', 'Lsat_1_v5_gn_6_85840' => 'lsa', 'Lsat_1_v5_gn_7_104161' => 'lsa', 'Lsat_1_v5_gn_7_14480' => 'lsa', 'Lsat_1_v5_gn_9_55081' => 'lsa', 'Lsat_1_v5_gn_9_94680' => 'lsa', 'Lsat_1_v5_gn_9_98081' => 'lsa', 'Manes.01G047900' => 'mes', 'Manes.01G248600' => 'mes', 'Manes.03G109800' => 'mes', 'Manes.06G146500' => 'mes', 'Manes.12G068900' => 'mes', 'Manes.15G087200' => 'mes', 'Mapoly0094s0072' => 'mpo', 'Mapoly0100s0059' => 'mpo', 'Mapoly0143s0030' => 'mpo', 'MBI06_g04242_MAGBIO' => 'mbi', 'MBI06_g04243_MAGBIO' => 'mbi', 'MBI06_g22399_MAGBIO' => 'mbi', 'MBI06_g42738_MAGBIO' => 'mbi', 'MBI06_g43065_MAGBIO' => 'mbi', 'MBI07_g20446_MAGBIO' => 'mbi', 'MBI07_g30184_MAGBIO' => 'mbi', 'MBI14_g29295_MAGBIO' => 'mbi', 'MBI14_g29296_MAGBIO' => 'mbi', 'MBI14_g29297_MAGBIO' => 'mbi', 'MBI18_g09767_MAGBIO' => 'mbi', 'MCO01G617' => 'mco', 'MCO15G332' => 'mco', 'MD01G1076400' => 'mdo', 'MD01G1199700' => 'mdo', 'MD03G1228100' => 'mdo', 'MD06G1037700' => 'mdo', 'MD06G1101400' => 'mdo', 'MD07G1145300' => 'mdo', 'MD07G1267700' => 'mdo', 'MD10G1328500' => 'mdo', 'MD11G1090000' => 'mdo', 'MD11G1247500' => 'mdo', 'MD14G1121100' => 'mdo', 'MD15G1405100' => 'mdo', 'MD15G1405200' => 'mdo', 'MD16G1272200' => 'mdo', 'Medtr2g085210' => 'mtr', 'Medtr5g009530' => 'mtr', 'Medtr5g085250' => 'mtr', 'Medtr8g027985' => 'mtr', 'MELO3C001390.2' => 'cme', 'MELO3C003316.2' => 'cme', 'MELO3C004719.2' => 'cme', 'MELO3C005738.2' => 'cme', 'MELO3C016699.2' => 'cme', 'MELO3C019731.2' => 'cme', 'MELO3C021715.2' => 'cme', 'MELO3C028810.2' => 'cme', 'MELO3C029009.2' => 'cme', 'MELO3C035120.2' => 'cme', 'Migut.E01232' => 'egut', 'Migut.F00348' => 'egut', 'Migut.F01124' => 'egut', 'Migut.H01246' => 'egut', 'Migut.H01941' => 'egut', 'Migut.L00551' => 'egut', 'Migut.M01361' => 'egut', 'Migut.N01565' => 'egut', 'MSTRG.12907' => 'ama', 'MSTRG.13124' => 'ama', 'MSTRG.14131' => 'ama', 'MSTRG.14620' => 'ama', 'MSTRG.1821' => 'ama', 'MSTRG.27118' => 'ama', 'MSTRG.27119' => 'ama', 'MSTRG.6835' => 'ama', 'MSTRG.8454' => 'ama', 'Nitab4.5_0000143g0520' => 'nta', 'Nitab4.5_0000223g0130' => 'nta', 'Nitab4.5_0000332g0110' => 'nta', 'Nitab4.5_0000522g0110' => 'nta', 'Nitab4.5_0000574g0300' => 'nta', 'Nitab4.5_0000622g0200' => 'nta', 'Nitab4.5_0001198g0320' => 'nta', 'Nitab4.5_0001241g0010' => 'nta', 'Nitab4.5_0001336g0040' => 'nta', 'Nitab4.5_0002396g0010' => 'nta', 'Nitab4.5_0004161g0060' => 'nta', 'Nitab4.5_0004377g0010' => 'nta', 'Nitab4.5_0005875g0050' => 'nta', 'Nitab4.5_0011138g0010' => 'nta', 'Nitab4.5_0013057g0010' => 'nta', 'Nitab4.5_0028943g0010' => 'nta', 'Nn1g01438' => 'nnu', 'Nn1g03366' => 'nnu', 'Nn1g04106' => 'nnu', 'Nn1g06522' => 'nnu', 'Nn1g07310' => 'nnu', 'Nn3g19084' => 'nnu', 'Nn6g33528' => 'nnu', 'Oeu003164.1' => 'oeu', 'Oeu007121.1' => 'oeu', 'Oeu007574.1' => 'oeu', 'Oeu007849.1' => 'oeu', 'Oeu011690.1' => 'oeu', 'Oeu019323.1' => 'oeu', 'Oeu019896.1' => 'oeu', 'Oeu024434.1' => 'oeu', 'Oeu039364.1' => 'oeu', 'Oeu039813.1' => 'oeu', 'Oeu046820.2' => 'oeu', 'Oeu051066.1' => 'oeu', 'Oeu062752.1' => 'oeu', 'Oeu063536.1' => 'oeu', 'Os01g0725800' => 'osa', 'Os02g0771100' => 'osa', 'Os05g0571000' => 'osa', 'Os08g0295200' => 'osa', 'Os12g0558133' => 'osa', 'Peaxi162Scf00000g00394' => 'pax', 'Peaxi162Scf00025g00283' => 'pax', 'Peaxi162Scf00047g01929' => 'pax', 'Peaxi162Scf00063g00311' => 'pax', 'Peaxi162Scf00069g00151' => 'pax', 'Peaxi162Scf00069g01428' => 'pax', 'Peaxi162Scf00069g01429' => 'pax', 'Peaxi162Scf00074g01219' => 'pax', 'Peaxi162Scf00099g01818' => 'pax', 'Peaxi162Scf00442g00622' => 'pax', 'PGR031G1852' => 'pgr', 'PGR031G2212' => 'pgr', 'PGR083G0059' => 'pgr', 'PGR142G3017' => 'pgr', 'PGR142G4059' => 'pgr', 'PGSC0003DMG400003832' => 'stu', 'PGSC0003DMG400006033' => 'stu', 'PGSC0003DMG400012163' => 'stu', 'PGSC0003DMG400013334' => 'stu', 'PGSC0003DMG400013893' => 'stu', 'PGSC0003DMG400015319' => 'stu', 'PGSC0003DMG400019379' => 'stu', 'Phvul.002G162800' => 'pvu', 'Phvul.002G296004' => 'pvu', 'Phvul.002G296008' => 'pvu', 'Phvul.005G071800' => 'pvu', 'Phvul.008G214400' => 'pvu', 'Phvul.010G111100' => 'pvu', 'Phvul.010G111200' => 'pvu', 'Phvul.011G158700' => 'pvu', 'Potri.001G094500' => 'ptr', 'Potri.001G399600' => 'ptr', 'Potri.003G137100' => 'ptr', 'Potri.004G002700' => 'ptr', 'Potri.011G021700' => 'ptr', 'Potri.011G119500' => 'ptr', 'Potri.012G140200' => 'ptr', 'Potri.014G095300' => 'ptr', 'Potri.014G159300' => 'ptr', 'Potri.015G143200' => 'ptr', 'Pp3c11_15840' => 'ppa', 'Pp3c13_21340' => 'ppa', 'Pp3c16_19410' => 'ppa', 'Pp3c1_13190' => 'ppa', 'Pp3c1_24850' => 'ppa', 'Pp3c1_3260' => 'ppa', 'Pp3c2_15860' => 'ppa', 'Pp3c2_24290' => 'ppa', 'Pp3c2_29420' => 'ppa', 'Pp3c3_16700' => 'ppa', 'Pp3c5_26150' => 'ppa', 'Pp3c6_5030' => 'ppa', 'Pp3c7_14320' => 'ppa', 'PRCOL_00000936' => 'pco', 'PRCOL_00005956' => 'pco', 'Prupe.2G183800' => 'ppe', 'Prupe.2G293400' => 'ppe', 'Prupe.4G013500' => 'ppe', 'Prupe.4G180900' => 'ppe', 'Prupe.5G031300' => 'ppe', 'Prupe.5G114800' => 'ppe', 'Psat0s3016g0360' => 'psa', 'Psat0s444g0040' => 'psa', 'Psat0s444g0120' => 'psa', 'Psat0s4635g0040' => 'psa', 'Psat1g081240' => 'psa', 'Psat2g025120' => 'psa', 'Psat2g147400' => 'psa', 'Psat2g185080' => 'psa', 'Psat3g013400' => 'psa', 'Psat3g089520' => 'psa', 'Psat4g051360' => 'psa', 'Psat4g159720' => 'psa', 'Psat5g242360' => 'psa', 'Psat7g142520' => 'psa', 'PSO063G2794' => 'pso', 'PSO135G1049' => 'pso', 'PSO170G5452' => 'pso', 'PSO384G4892' => 'pso', 'PSO478G1968' => 'pso', 'PSO541G1463' => 'pso', 'PSO541G6280' => 'pso', 'PSO675G4498' => 'pso', 'PSO675G7456' => 'pso', 'PSO782G0794' => 'pso', 'PSO832G3589' => 'pso', 'QL02p031492' => 'qlo', 'QL03p008156' => 'qlo', 'QL03p027017' => 'qlo', 'QL04p059219' => 'qlo', 'QL05p070127' => 'qlo', 'QL08p021921' => 'qlo', 'QL08p021943' => 'qlo', 'QL08p030433' => 'qlo', 'QL09p014359' => 'qlo', 'RcHm_v2.0_Chr1g0358871' => 'rch', 'RcHm_v2.0_Chr1g0377161' => 'rch', 'RcHm_v2.0_Chr5g0001791' => 'rch', 'RcHm_v2.0_Chr5g0033591' => 'rch', 'RcHm_v2.0_Chr7g0195501' => 'rch', 'RcHm_v2.0_Chr7g0210341' => 'rch', 'Rhsim02G0240800' => 'rsi', 'Rhsim03G0180200' => 'rsi', 'Rhsim04G0049600' => 'rsi', 'Rhsim06G0199300' => 'rsi', 'Rhsim13G0142800' => 'rsi', 'Rhsim13G0148700' => 'rsi', 'Sabra01G0070600' => 'sbr', 'Sabra02G0171400' => 'sbr', 'Sabra03G0098600' => 'sbr', 'Sabra04G0001200' => 'sbr', 'Sabra11G0103900' => 'sbr', 'Sabra12G0105200' => 'sbr', 'Sabra14G0069800' => 'sbr', 'Sabra14G0121000' => 'sbr', 'Sabra15G0152900' => 'sbr', 'Sabra16G0262100' => 'sbr', 'SalBow1G4708' => 'sbo', 'SalBow2G2597' => 'sbo', 'SalBow4G1597' => 'sbo', 'SalBow7G3730' => 'sbo', 'SalBow8G3076' => 'sbo', 'Sc05g0009500' => 'sci', 'Sc16g0007000' => 'sci', 'Sc21g0001130' => 'sci', 'Sc22g0005190' => 'sci', 'Sc23g0002250' => 'sci', 'Sc23g0002330' => 'sci', 'Sed0004316' => 'sed', 'Sed0012661' => 'sed', 'Sed0013567' => 'sed', 'Sed0013780' => 'sed', 'Sed0017890' => 'sed', 'Sed0021610' => 'sed', 'Sed0022159' => 'sed', 'SEGI_04250' => 'sgi', 'SEGI_04755' => 'sgi', 'SEGI_12081' => 'sgi', 'SEGI_13296' => 'sgi', 'SEGI_15127' => 'sgi', 'SEGI_17834' => 'sgi', 'SEGI_23822' => 'sgi', 'SEGI_37077' => 'sgi', 'SEGI_41510' => 'sgi', 'SGA_v2.0_scaffold111G31434' => 'sas', 'SGA_v2.0_scaffold13G06650' => 'sas', 'SGA_v2.0_scaffold144G35840' => 'sas', 'SGA_v2.0_scaffold159G37551' => 'sas', 'SGA_v2.0_scaffold49G18353' => 'sas', 'SGA_v2.0_scaffold60G21027' => 'sas', 'SGA_v2.0_scaffold7G03792' => 'sas', 'SGA_v2.0_scaffold9G04911' => 'sas', 'SHI07021' => 'shi', 'SHI07023' => 'shi', 'SHI10060' => 'shi', 'SMO115G0171' => 'smo', 'SMO119G0051' => 'smo', 'SMO142G0013' => 'smo', 'SMO147G0313' => 'smo', 'SMO203G0022' => 'smo', 'SMO358G0162' => 'smo', 'Solyc07g063120.4' => 'sly', 'Solyc08g081990.3' => 'sly', 'Solyc10g011690.3' => 'sly', 'Solyc11g005190.3' => 'sly', 'Solyc11g011980.3' => 'sly', 'Solyc12g005950.2' => 'sly', 'Solyc12g013840.3' => 'sly', 'Sopen07g031310' => 'spe', 'Sopen08g030290' => 'spe', 'Sopen10g005500' => 'spe', 'Sopen11g001190' => 'spe', 'Sopen11g006790' => 'spe', 'Sopen12g001900' => 'spe', 'Sopen12g007160' => 'spe', 'Sp1g39640' => 'spa', 'Sp2g23490' => 'spa', 'Sp3g13540' => 'spa', 'Sp4g15310' => 'spa', 'Sp4g28380' => 'spa', 'Sp6g06310' => 'spa', 'Sp6g14500' => 'spa', 'TAR374G0912' => 'tar', 'TAR375G1095' => 'tar', 'TAR627G0158' => 'tar', 'TAR627G0708' => 'tar', 'TAR629G2071' => 'tar', 'TAR629G2342' => 'tar', 'TAR629G2523' => 'tar', 'THA.LOC104798925' => 'tha', 'THA.LOC104800255' => 'tha', 'THA.LOC104801011' => 'tha', 'THA.LOC104802058' => 'tha', 'THA.LOC104814910' => 'tha', 'THA.LOC104818079' => 'tha', 'Thecc.01G183000' => 'tca', 'Thecc.01G346900' => 'tca', 'Thecc.03G056400' => 'tca', 'Thecc.03G292700' => 'tca', 'Thecc.06G230000' => 'tca', 'Thecc.07G089800' => 'tca', 'Thhalv10001291m.g' => 'esa', 'Thhalv10005519m.g' => 'esa', 'Thhalv10011249m.g' => 'esa', 'Thhalv10012045m.g' => 'esa', 'Thhalv10015606m.g' => 'esa', 'Thhalv10016348m.g' => 'esa', 'Thhalv10020057m.g' => 'esa', 'Thhalv10028383m.g' => 'esa', 'TPR.G1091' => 'tpr', 'TPR.G25638' => 'tpr', 'TPR.G38971' => 'tpr', 'TPR.G6705' => 'tpr', 'TWI14G0609' => 'twi', 'TWI15G1098' => 'twi', 'TWI18G0734' => 'twi', 'TWI36G1526' => 'twi', 'TWI39G0475' => 'twi', 'TWI39G0522' => 'twi', 'TWI60G0969' => 'twi', 'TWI63G1521' => 'twi', 'unitig_21.g20067' => 'ugi', 'unitig_21.g20068' => 'ugi', 'unitig_21.g20069' => 'ugi', 'unitig_26.g9530' => 'ugi', 'unitig_26.g9531' => 'ugi', 'unitig_62.g23232' => 'ugi', 'unitig_699.g19229' => 'ugi', 'unitig_744.g24516' => 'ugi', 'unitig_749.g13526' => 'ugi', 'unitig_749.g13761' => 'ugi', 'vmacro03657' => 'vma', 'vmacro06687' => 'vma', 'vmacro09368' => 'vma', 'vmacro11446' => 'vma', 'vmacro11867' => 'vma', 'vmacro11868' => 'vma', 'VMungo0251G1858' => 'vmu', 'VMungo0331G0866' => 'vmu', 'VMungo0331G1410' => 'vmu', 'VMungo0647G2441' => 'vmu', 'VMungo1080G1421' => 'vmu', 'VMungo1127G0557' => 'vmu', 'VMungo1127G0709' => 'vmu', 'VMungo1215G2133' => 'vmu', 'VMungo1383G1058' => 'vmu', 'Zm00001eb026560' => 'zma', 'Zm00001eb154420' => 'zma', 'Zm00001eb193380' => 'zma', 'Zm00001eb229880' => 'zma', 'Zm00001eb256270' => 'zma', 'Zm00001eb274370' => 'zma', 'Zm00001eb296410' => 'zma', 'Zm00001eb344140' => 'zma', 'Zm00001eb361760' => 'zma' ) $gf_id = 'HOM05D000684' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000684' ) $data_identifier = 'HOM05D000684' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 8, 'aag' => (int) 3, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 10, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 11, 'bca' => (int) 21, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 11, 'cde' => (int) 11, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 13, 'ghi' => (int) 20, 'gra' => (int) 7, 'vvi' => (int) 10, 'han' => (int) 17, 'cav' => (int) 5, 'hma' => (int) 10, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 4, 'lsa' => (int) 15, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 11, 'mco' => (int) 2, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 16, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 13, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 14, 'pso' => (int) 11, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361760' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1